SpaCCI R package can be installed from r cran or GitHub using the following steps:

Dependencies

  • R version (>= 3.5.0)
  • R packages: Rcpp (>= 1.0.13), RcppArmadillo, nnls, ggrepel, pheatmap, circlize (>= 0.4.12), Matrix, Seurat (>= 4.0.0), dplyr, patchwork, grDevices, reshape2, graphics, ggplot2

1. Install devtools

if you want to download from r cran, you could skip this step.

if (!requireNamespace("devtools", quietly = TRUE)) {
     install.packages("devtools")
}

2. Install SpaCCI

Install from Github:

devtools::install_github("LitingKu/SpaCCI")

Install from r cran:

install.packages("SpaCCI")

3. Load SpaCCI

library(SpaCCI)

The package has currently been tested on:

  • macOS(arm64,x86_64)
  • linux(x86_64)
  • Windows(x86_64)